Add minibenchmark notebook - #15
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Removed redundant explanations about the notebook's purpose and sampling reduction.
Updated the README to change 'inspection of the resulting CAPRI evaluation tables' to 'analysis'.
…tro, drop empty cell
amjjbonvin
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Sep 8, 2026
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A few points on the notebook:
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Would it work running it directly on a Mac?(I see you are pulling a x86 linux version of the runner)
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When referring/describing files (like the config file for the test benchmark), do provide their full path so that users can find them
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For rigidbody, the sampling should be ideally a multiple of the number of core for efficiency.
I did run the notebook on colab, the benchmark completed within 5 minutes. Nice! Could not test the EGI notebooks environment because of a current EGI SSO issue.
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Summary
Adds an interactive Jupyter notebook that walks through the protein–peptide benchmarking workflow end to end
Changes
notebook/HADDOCK3_protein_peptide_small_benchmark.ipynb— new notebookREADME.md— new "Interactive notebook" section under Quick Startversions.env— bump haddock3 to2026.8.0, haddock-runner tov4.1.0